Rost J., Hutto R.L., Brotons L., Pons P. (2013) Comparing the effect of salvage logging on birds in the Mediterranean Basin and the Rocky Mountains: Common patterns, different conservation implications. Biological Conservation. 158: 7-13.LinkDoi: 10.1016/j.biocon.2012.08.022
Postfire salvage logging is currently a controversial issue because of the impact that the removal of snags has on ecosystem structure and function. Although it is a common practice worldwide, the absence of comparisons across regions hinders the development of broad generalizations. Here we compare bird response to postfire salvage logging in two regions with significant differences in landscape and bird communities, the Mediterranean Basin and the Rocky Mountains. The Mediterranean Basin features a landscape dominated by a mosaic of small-sized forests, farmland and shrublands, while the Rocky Mountains have large extensions of continuous forests. Bird conservation priorities are also different. In the Mediterranean Basin, priorities are oriented toward farmland birds, while they are oriented toward fire-specialists in the Rocky Mountains. We used databases describing bird species occurrence in burned forests from both regions and defined three groups of species based on their level of association with snags. We then compared the richness of each group among logged and unlogged sites, and also between regions. We found a higher proportion of species that showed some degree of association with snags in burned forests of the Rocky Mountains than in the Mediterranean Basin. Highly snag-associated birds from both regions showed a common negative response to salvage logging. Not snag-associated species increased in salvaged areas, but only in the Mediterranean Basin. The general negative effect of salvage logging on forest-dwelling species that are associated with trees or snags is a noteworthy pattern given the big differences between regions. Nevertheless, in the Mediterranean, some threatened farmland species benefit from logging, so the overall effect of the removal of snags appears to be relatively more detrimental to birds in the Rocky Mountains. © 2012 Elsevier Ltd.
Carnicer J., Brotons L., Stefanescu C., Peñuelas J. (2012) Biogeography of species richness gradients: Linking adaptive traits, demography and diversification. Biological Reviews. 87: 457-479.LinkDoi: 10.1111/j.1469-185X.2011.00210.x
Here we review how adaptive traits contribute to the emergence and maintenance of species richness gradients through their influence on demographic and diversification processes. We start by reviewing how demographic dynamics change along species richness gradients. Empirical studies show that geographical clines in population parameters and measures of demographic variability are frequent along latitudinal and altitudinal gradients. Demographic variability often increases at the extremes of regional species richness gradients and contributes to shape these gradients. Available studies suggest that adaptive traits significantly influence demographic dynamics, and set the limits of species distributions. Traits related to thermal tolerance, resource use, phenology and dispersal seem to play a significant role. For many traits affecting demography and/or diversification processes, complex mechanistic approaches linking genotype, phenotype and fitness are becoming progressively available. In several taxa, species can be distributed along adaptive trait continuums, i.e. a main axis accounting for the bulk of inter-specific variation in some correlated adaptive traits. It is shown that adaptive trait continuums can provide useful mechanistic frameworks to explain demographic dynamics and diversification in species richness gradients. Finally, we review the existence of sequences of adaptive traits in phylogenies, the interactions of adaptive traits and community context, the clinal variation of traits across geographical gradients, and the role of adaptive traits in determining the history of dispersal and diversification of clades. Overall, we show that the study of demographic and evolutionary mechanisms that shape species richness gradients clearly requires the explicit consideration of adaptive traits. To conclude, future research lines and trends in the field are briefly outlined. © 2011 The Authors. Biological Reviews © 2011 Cambridge Philosophical Society.
De Cáceres M., Brotons L. (2012) Calibration of hybrid species distribution models: The value of general-purpose vs. targeted monitoring data. Diversity and Distributions. 18: 977-989.LinkDoi: 10.1111/j.1472-4642.2012.00899.x
Aim Temporally replicated observations are essential for the calibration and validation of species distribution models (SDMs) aiming at making temporal extrapolations. We study here the usefulness of a general-purpose monitoring programme for the calibration of hybrid SDMs. As a benchmark case, we take the calibration with data from a monitoring programme that specifically surveys those areas where environmental changes expected to be relevant occur. Location Catalonia, north-east of Spain. Methods We modelled the distribution changes of twelve open-habitat bird species in landscapes whose dynamics are driven by fire and forest regeneration. We developed hybrid SDMs combining correlative habitat suitability with mechanistic occupancy models. We used observations from two monitoring programmes to provide maximum-likelihood estimates for spread parameters: a common breeding bird survey (CBS) and a programme specifically designed to monitor bird communities within areas affected by wildfires (DINDIS). Results Both calibration with CBS and DINDIS data yielded sound spread parameter estimates and range dynamics that suggested dispersal limitations. However, compared to calibration with DINDIS data, calibration with CBS data leads to biased estimates of spread distance for seven species and to a higher degree of uncertainty in predicted range dynamics for six species. Main conclusions We have shown that available monitoring data can be used in the calibration of the mechanistic component of hybrid SDMs. However, if the dynamics of the target species occur within areas not well covered, general-purpose monitoring data can lead to biased and inaccurate parameter estimates. To determine the potential usefulness of a given monitoring data set for the calibration of the mechanistic component of a hybrid SDM, we recommend quantifying the number of surveyed sites that are predicted to undergo habitat suitability changes. © 2012 Blackwell Publishing Ltd.
De Cáceres M., Legendre P., Wiser S.K., Brotons L. (2012) Using species combinations in indicator value analyses. Methods in Ecology and Evolution. 3: 973-982.LinkDoi: 10.1111/j.2041-210X.2012.00246.x
1. Indicator species are often determined using an analysis of the relationship between the species occurrence or abundance values from a set of sites and the classification of the same sites into site groups (habitat types, community types, disturbance states, etc.). It may happen, however, that a particular site group has no indicator species even if its sites have a community composition that is clearly distinct from the sites of other site groups. This motivates an exploration of the indicator value of not only individual species but also species combinations. 2. Here, we present a novel statistical approach to determine indicators of site groups using species data. Unlike traditional indicator value analysis, we allow indicators to be species combinations in addition to single species. We require that all the species forming the combination must occur in the site to use the combination as an indicator. We present a simple algorithm that identifies the set of indicators (each one being either a single species or a species combination) that show high positive predictive value for the target site group. Moreover, we demonstrate the use of the percentage of sites of the site group where at least one of its valid indicators occurs to determine whether the group can be reliably predicted throughout its range. 3. Using a simulation study, we show that if two species are not strongly correlated and their frequency in the data set is larger than the frequency of sites belonging to the site group, the joint occurrence of the two species has higher positive predictive value for the site group than the two species taken independently. 4. We illustrate the proposed method by determining which combinations of vascular plants can be used as indicators for 29 shrubland and forest vegetation types of New Zealand. 5. The proposed methodology extends traditional indicator value analyses and will be useful to develop multispecies ecological or environmental indicators. Further, it will allow newly surveyed sites to be reliably assigned to previously defined vegetation types. © 2012 The Authors. Methods in Ecology and Evolution © 2012 British Ecological Society.
Gonzalez-Olabarria J.R., Brotons L., Gritten D., Tudela A., Teres J.A. (2012) Identifying location and causality of fire ignition hotspots in a Mediterranean region. International Journal of Wildland Fire. 21: 905-914.LinkDoi: 10.1071/WF11039
Fire ignitions tend to be spatially aggregated depending on their causality. In highly populated regions, such as the northern Mediterranean basin, human activities are the main cause of ignitions. The ability to locate zones with an intense and recurrent history of fire occurrence and identify their specific cause can be helpful in the implementation of measures to reduce the problem. In the present study, kernel methods, non-parametric statistical methods for estimating the spatial distribution of probabilities of point-based data, are used to define ignition hotspots based on historical records of fire ignitions in Catalonia for the period 19952006. Comparison of the cause of the ignitions within the area of the hotspots enabled analysis of the relation between the cause of the ignitions and the occurrence of hotspots. The results obtained highlighted that the activity of arsonists showed strong spatial clustering, with the share of intentionally caused ignitions within the hotspot areas accounting for 60.1% of the fires, whereas for the whole of Catalonia they only represented 24.3%. The findings of the study provide an opportunity to optimally allocate law-enforcement and educational resources within hotspot areas. © IAWF 2012.
Leung B., Roura-Pascual N., Bacher S., Heikkilä J., Brotons L., Burgman M.A., Dehnen-Schmutz K., Essl F., Hulme P.E., Richardson D.M., Sol D., Vilà M. (2012) TEASIng apart alien species risk assessments: A framework for best practices. Ecology Letters. 15: 1475-1493.LinkDoi: 10.1111/ele.12003
Some alien species cause substantial impacts, yet most are innocuous. Given limited resources, forecasting risks from alien species will help prioritise management. Given that risk assessment (RA) approaches vary widely, a synthesis is timely to highlight best practices. We reviewed quantitative and scoring RAs, integrating > 300 publications into arguably the most rigorous quantitative RA framework currently existing, and mapping each study onto our framework, which combines Transport, Establishment, Abundance, Spread and Impact (TEASI). Quantitative models generally measured single risk components (78% of studies), often focusing on Establishment alone (79%). Although dominant in academia, quantitative RAs are underused in policy, and should be made more accessible. Accommodating heterogeneous limited data, combining across risk components, and developing generalised RAs across species, space and time without requiring new models for each species may increase attractiveness for policy applications. Comparatively, scoring approaches covered more risk components (50% examined > 3 components), with Impact being the most common component (87%), and have been widely applied in policy (> 57%), but primarily employed expert opinion. Our framework provides guidance for questions asked, combining scores and other improvements. Our risk framework need not be completely parameterised to be informative, but instead identifies opportunities for improvement in alien species RA. © 2012 Blackwell Publishing Ltd/CNRS.
DeVictor V, van Swaay C, Brereton T, Brotons L, Chamberlain D, Heliölä J, Herrando S, Julliard R, Kuusaari M, Lindstrom A, Reif J, Roy DB, Schweiger O, Settele J, Stefanescu C, Van Strein A, Van Turnhout C, Vermouzek Z, De Vries MW, Wynhoff I, Jiguet F (2012) Uncertainty in thermal tolerances and climatic debt. Nature Climate Change 2: 638-639.
Sarda-Palomera F, Bota G, Viñolo C, Pallarés O, Sazatornil V, Brotons L, Gomáriz S, Sarda F (2012) Fine-scale bird monitoring from light unmanned aircraft systems. Ibis 154: 177:183.
DeVictor V, van Swaay C, Brereton T, Brotons L, Chamberlain D, Heliölä J, Herrando S, Julliard R, Kuusaari M, Lindstrom A, Reif J, Roy DB, Schweiger O, Settele J, Stefanescu C, Van Strein A, Van Turnhout C, Vermouzek Z, De Vries MW, Wynhoff I, Jiguet F (2012) Differences in the climatic debts of birds and butterflies at a continental scale. Nature Climate Change 2: 121-124.
Marcer A., Pino J., Pons X., Brotons L. (2012) Modelling invasive alien species distributions from digital biodiversity atlases. Model upscaling as a means of reconciling data at different scales. Diversity and Distributions. 18: 1177-1189.LinkDoi: 10.1111/j.1472-4642.2012.00911.x
Aim: There is a wealth of information on species occurrences in biodiversity data banks, albeit presence-only, biased and scarce at fine resolutions. Moreover, fine-resolution species maps are required in biodiversity conservation. New techniques for dealing with this kind of data have been reported to perform well. These fine-resolution maps would be more robust if they could explain data at coarser resolutions at which species distributions are well represented. We present a new methodology for testing this hypothesis and apply it to invasive alien species (IAS). Location: Catalonia, Spain. Methods: We used species presence records from the Biodiversity data bank of Catalonia to model the distribution of ten IAS which, according to some recent studies, achieve their maximum distribution in the study area. To overcome problems inherent with the data, we prepared different correction treatments: three for dealing with bias and five for autocorrelation. We used the MaxEnt algorithm to generate models at 1-km resolution for each species and treatment. Acceptable models were upscaled to 10 km and validated against independent 10 km occurrence data. Results: Of a total of 150 models, 20 gave acceptable results at 1-km resolution and 12 passed the cross-scale validation test. No apparent pattern emerged, which could serve as a guide on modelling. Only four species gave models that also explained the distribution at the coarser scale. Main conclusions: Although some techniques may apparently deliver good distribution maps for species with scarce and biased data, they need to be taken with caution. When good independent data at a coarser scale are available, cross-scale validation can help to produce more reliable and robust maps. When no independent data are available for validation, however, new data gathering field surveys may be the only option if reliable fine-scale resolution maps are needed. © 2012 Blackwell Publishing Ltd.
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