Gap-filling a spatially explicit plant trait database: Comparing imputation methods and different levels of environmental information

Poyatos R., Sus O., Badiella L., Mencuccini M., Martínez-Vilalta J. (2018) Gap-filling a spatially explicit plant trait database: Comparing imputation methods and different levels of environmental information. Biogeosciences. 15: 2601-2617.
Enllaç
Doi: 10.5194/bg-15-2601-2018

Resum:

The ubiquity of missing data in plant trait databases may hinder trait-based analyses of ecological patterns and processes. Spatially explicit datasets with information on intraspecific trait variability are rare but offer great promise in improving our understanding of functional biogeography. At the same time, they offer specific challenges in terms of data imputation. Here we compare statistical imputation approaches, using varying levels of environmental information, for five plant traits (leaf biomass to sapwood area ratio, leaf nitrogen content, maximum tree height, leaf mass per area and wood density) in a spatially explicit plant trait dataset of temperate and Mediterranean tree species (Ecological and Forest Inventory of Catalonia, IEFC, dataset for Catalonia, north-east Iberian Peninsula, 31 900 km2). We simulated gaps at different missingness levels (10-80 %) in a complete trait matrix, and we used overall trait means, species means, k nearest neighbours (kNN), ordinary and regression kriging, and multivariate imputation using chained equations (MICE) to impute missing trait values. We assessed these methods in terms of their accuracy and of their ability to preserve trait distributions, multi-trait correlation structure and bivariate trait relationships. The relatively good performance of mean and species mean imputations in terms of accuracy masked a poor representation of trait distributions and multivariate trait structure. Species identity improved MICE imputations for all traits, whereas forest structure and topography improved imputations for some traits. No method performed best consistently for the five studied traits, but, considering all traits and performance metrics, MICE informed by relevant ecological variables gave the best results. However, at higher missingness (> 30 %), species mean imputations and regression kriging tended to outperform MICE for some traits. MICE informed by relevant ecological variables allowed us to fill the gaps in the IEFC incomplete dataset (5495 plots) and quantify imputation uncertainty. Resulting spatial patterns of the studied traits in Catalan forests were broadly similar when using species means, regression kriging or the best-performing MICE application, but some important discrepancies were observed at the local level. Our results highlight the need to assess imputation quality beyond just imputation accuracy and show that including environmental information in statistical imputation approaches yields more plausible imputations in spatially explicit plant trait datasets. © 2018 Author(s).

Llegeix més

Assessing the distribution of forest ecosystem services in a highly populated Mediterranean region

Roces-Díaz J.V., Vayreda J., Banqué-Casanovas M., Cusó M., Anton M., Bonet J.A., Brotons L., De Cáceres M., Herrando S., Martínez de Aragón J., de-Miguel S., Martínez-Vilalta J. (2018) Assessing the distribution of forest ecosystem services in a highly populated Mediterranean region. Ecological Indicators. 93: 986-997.
Enllaç
Doi: 10.1016/j.ecolind.2018.05.076

Resum:

Forest ecosystems provide a wide range of goods and services to society and host high levels of biodiversity. Nevertheless, forest ecosystem services (ES) are often quantified and assessed using simplified methodologies (e.g., proxy methods based exclusively on Land Use Land Cover maps) that introduce substantial uncertainty in the analysis by ignoring, for instance, the species composition and spatial configuration of the ecosystems studied. In this work we defined and calculated a set of 12 indicators of several ES for the forests of the highly populated region of Catalonia (North-eastern Iberian Peninsula). The indicators combined different sources of information such as forest surveys, ecological model predictions and official statistics, but also included additional land cover information. All ES indicators were aggregated at the municipality level to compare their values and distribution patterns. We assessed spatial trade-offs and synergies among ES, as well as their relationships with a set of socioeconomic, climatic and biodiversity variables using correlation analyses and mixed-effects models. The results suggest a clustering of provisioning and regulating ES in mountainous zones towards the North of the study area. These two types of services showed a high degree of spatial similarity and presented high positive correlations. In contrast, cultural ES showed a more scattered pattern, which included lower elevation areas in the South of the study region. Climatic conditions were the main determinants of the spatial variability in the supply of the different ES, with most indicators being positively associated with precipitation and negatively associated with temperature. In addition, biodiversity (particularly woody species richness) showed positive relations with most of these ES, while socioeconomic variables (such as population density and the percentage employment in agriculture) showed negative associations with most of them. The combination of information from different data sources (including primary data) allowed for a detailed analysis of forest ES, likely removing some of the problems derived from approaches based only on proxy methods. In addition, the use of municipalities as study unit makes results directly relevant to management and planning strategies operating at this scale (e.g., forest management and planning). © 2018 Elsevier Ltd

Llegeix més

The spatial level of analysis affects the patterns of forest ecosystem services supply and their relationships

Roces-Díaz, J.V., Vayreda, J., Banqué-Casanovas, M., Díaz-Varela, E., Bonet, J.A., Brotons, L., de-Miguel, S., Herrando, S., Martínez-Vilalta, J. (2018) The spatial level of analysis affects the patterns of forest ecosystem services supply and their relationships. Science of the Total Environment. 626: 1270-1283.
Enllaç
Doi: 10.1016/j.scitotenv.2018.01.150

Resum:

Changes in tree resistance, recovery and resilience across three successive extreme droughts in the northeast Iberian Peninsula

Serra-Maluquer X., Mencuccini M., Martínez-Vilalta J. (2018) Changes in tree resistance, recovery and resilience across three successive extreme droughts in the northeast Iberian Peninsula. Oecologia. : 1-12.
Enllaç
Doi: 10.1007/s00442-018-4118-2

Resum:

Understanding which variables affect forest resilience to extreme drought is key to predict future dynamics under ongoing climate change. In this study, we analyzed how tree resistance, recovery and resilience to drought have changed along three consecutive droughts and how they were affected by species, tree size, plot basal area (as a proxy for competition) and climate. We focused on the three most abundant pine species in the northeast Iberian Peninsula: Pinus halepensis, P. nigra and P. sylvestris during the three most extreme droughts recorded in the period 1951–2010 (occurred in 1986, 1994, and 2005–2006). We cored trees from permanent sample plots and used dendrochronological techniques to estimate resistance (ability to maintain growth level during drought), recovery (growth increase after drought) and resilience (capacity to recover pre-drought growth levels) in terms of tree stem basal area increment. Mixed-effects models were used to determine which tree- and plot-level variables were the main determinants of resistance, recovery and resilience, and to test for differences among the studied droughts. Larger trees were significantly less resistant and resilient. Plot basal area effects were only observed for resilience, with a negative impact only during the last drought. Resistance, recovery and resilience differed across the studied drought events, so that the studied populations became less resistant, less resilient and recovered worse during the last two droughts. This pattern suggests an increased vulnerability to drought after successive drought episodes. © 2018 Springer-Verlag GmbH Germany, part of Springer Nature

Llegeix més

Variation in xylem vulnerability to embolism in European beech from geographically marginal populations

Stojnić S., Suchocka M., Benito-Garzón M., Torres-Ruiz J.M., Cochard H., Bolte A., Cocozza C., Cvjetković B., De Luis M., Martinez-Vilalta J., Ræbild A., Tognetti R., Delzon S. (2018) Variation in xylem vulnerability to embolism in European beech from geographically marginal populations. Tree Physiology. 38: 173-185.
Enllaç
Doi: 10.1093/treephys/tpx128

Resum:

Climate change is expected to increase the frequency and intensity of droughts and heatwaves in Europe, leading to effects on forest growth and major forest dieback events due to hydraulic failure caused by xylem embolism. Inter-specific variability in embolism resistance has been studied in detail, but little is known about intra-specific variability, particularly in marginal populations. We evaluated 15 European beech populations, mostly from geographically marginal sites of the species distribution range, focusing particularly on populations from the dry southern margin. We found small, but significant differences in resistance to embolism between populations, with xylem pressures causing 50% loss of hydraulic conductivity ranging from -2.84 to -3.55 MPa. Significant phenotypic clines of increasing embolism resistance with increasing temperature and aridity were observed: the southernmost beech populations growing in a warmer drier climate and with lower habitat suitability have higher resistance to embolism than those from Northern Europe growing more favourable conditions. Previous studies have shown that there is little or no difference in embolism resistance between core populations, but our findings show that marginal populations have developed ways of protecting their xylem based on either evolution or plasticity. © The Author 2017. Published by Oxford University Press. All rights reserved.

Llegeix més

Forest management for adaptation to climate change in the Mediterranean basin: A synthesis of evidence

Vilà-Cabrera, A., Coll, L., Martínez-Vilalta, J., Retana, J. (2018) Forest management for adaptation to climate change in the Mediterranean basin: A synthesis of evidence. Forest Ecology and Management. 407: 16-22.
Enllaç
Doi: 10.1016/j.foreco.2017.10.021

Resum:

A multi-species synthesis of physiological mechanisms in drought-induced tree mortality

Adams, H.D., Zeppel, M.J.B., Anderegg, W.R.L., Hartmann, H., Landhäusser, S.M., Tissue, D.T., Huxman, T.E., Hudson, P.J., Franz, T.E., Allen, C.D., Anderegg, L.D.L., Barron-Gafford, G.A., Beerling, D.J., Breshears, D.D., Brodribb, T.J., Bugmann, H., Cobb, R.C., Collins, A.D., Dickman, L.T., Duan, H., Ewers, B.E., Galiano, L., Galvez, D.A., Garcia-Forner, N., Gaylord, M.L., Germino, M.J., Gessler, A., Hacke, U.G., Hakamada, R., Hector, A., Jenkins, M.W., Kane, J.M., Kolb, T.E., Law, D.J., Lewis, J.D., Limousin, J.-M., Love, D.M., Macalady, A.K., Martínez-Vilalta, J., Mencuccini, M., Mitchell, P.J., Muss, J.D., O'Brien, M.J., O'Grady, A.P., Pangle, R.E., Pinkard, E.A., Piper, F.I., Plaut, J.A., Pockman, W.T., Quirk, J., Reinhardt, K., Ripullone, F., Ryan, M.G., Sala, A., Sevanto, S., Sperry, J.S., Vargas, R., Vennetier, M., Way, D.A., Xu, C., Yepez, E.A., McDowell, N.G. (2017) A multi-species synthesis of physiological mechanisms in drought-induced tree mortality. Nature Ecology and Evolution. 1: 1285-1291.
Enllaç
Doi: 10.1038/s41559-017-0248-x

Resum:

A review of the combination among global change factors in forests, shrublands and pastures of the Mediterranean Region: Beyond drought effects

Doblas-Miranda, E., Alonso, R., Arnan, X., Bermejo, V., Brotons, L., de las Heras, J., Estiarte, M., Hódar, J.A., Llorens, P., Lloret, F., López-Serrano, F.R., Martínez-Vilalta, J., Moya, D., Peñuelas, J., Pino, J., Rodrigo, A., Roura-Pascual, N., Valladares, F., Vilà, M., Zamora, R., Retana, J. (2017) A review of the combination among global change factors in forests, shrublands and pastures of the Mediterranean Region: Beyond drought effects. Global and Planetary Change. 148: 42-54.
Enllaç
Doi: 10.1016/j.gloplacha.2016.11.012

Resum:

The fate of recently fixed carbon after drought release: Towards unravelling C storage regulation in Tilia platyphyllos and Pinus sylvestris

Galiano, L., Timofeeva, G., Saurer, M., Siegwolf, R., Martínez-Vilalta, J., Hommel, R., Gessler, A. (2017) The fate of recently fixed carbon after drought release: Towards unravelling C storage regulation in Tilia platyphyllos and Pinus sylvestris. Plant Cell and Environment. : 0-0.
Enllaç
Doi: 10.1111/pce.12972

Resum:

Isohydric species are not necessarily more carbon limited than anisohydric species during drought

Garcia-Forner, N., Biel, C., Savé, R., Martínez-Vilalta, J. (2017) Isohydric species are not necessarily more carbon limited than anisohydric species during drought. Tree physiology. 37: 441-455.
Enllaç
Doi: 10.1093/treephys/tpw109

Resum:

Pàgines